discovery¶

Return the data directory without DATA_DIR: data/ of a source checkout, else ./visfem_data, where the fetch commands put the example data.

Return stem->path for all .xdmf files with a matching .h5 in directory.

Return sorted organ names available for a patient directory.

Return name with a space inserted after a known leading prefix word.

Return a readable display name for an XDMF stem.

Return the sorted paths of every dataset descriptor JSON under DATASETS_DIR.

Return the validated ProjectMetadata parsed from the JSON at path; raises ValidationError or OSError.

Return ProjectMetadata for each readable, valid dataset JSON under DATASETS_DIR, keyed by file stem and filtered by ALLOWED_DATASETS.

Return the sorted numeric ids of the patient_<n> folders in ddir.

Return the datasets in metadata grouped by first organ_system value, groups sorted by that value and entries by sort_order then name.

Return the dataset directory for meta.

Return the PVD file path for PVD-format datasets, else None.

Return the patient_NN folder for patient under ddir.

Return the active timeseries file of meta: its PVD for a PVD dataset, else the XDMF in ddir named by state.active_xdmf, else the first XDMF in ddir, else None.

Return the per-patient GRASP phase-series PVD path, or None if absent.

Return the number of contrast phases in a GRASP per-patient PVD.

Return a plain dict of meta for Trame state.